Genome-wide association meta-regression identifies stem cell lineage orchestration as a key driver of acne risk.MedRxiv : The Preprint Server For Health Sciences • July 16, 2025
Jessye Maxwell, Brittany Mitchell, Xinyi Duharpur, Luba Pardo, Willemijn C A Witkam, Nick Dand, Meike Bartels, Michael Betti, Dorret Boomsma, Xianjun Dong, Zachary Gerring, Sarah Finer, Jouke Hottenga, George Hripcsak, Laura Huilaja, Kristian Hveem, Benjamin Jacobs, Mart Kals, James Kaufman Cook, Johannes Kettunen, Atlas Khan, KĂĽlli Kingo, Krzysztof Kiryluk, Mari Løset, Gerton Lunter, Michelle Lupton, Josine Min, Nicholas Martin, Sarah Medland, Dorien Neijzen, Tamar E Nijsten, Tiit Nikopensius, Catherine Olsen, Lynn Petukhova, Anu Reigo, Miguel RenterĂa, Rossella Rispoli, Jake Saklatvala, Eeva Sliz, Kaisa Tasanen Määttä, Laurent Thomas, Richard Trembath, Mariliis Vaht, David Van Heel, Chunhua Weng, David Whiteman, Jonathan Barker, Catherine Smith, Michael Simpson
Over 85% of the population experience acne at some point in their lives, with its severity spanning a quantitative spectrum, from mild, transient outbreaks to more persistent, severe forms of the condition. Moderate to severe disease poses a substantial global burden arising from both the physical and psychological impacts of this highly visible condition. The analytical approach taken in this study aimed to address the impact of variation in the dichotomisation of acne case control status, driven by ascertainment and study design, on effect size estimates across independent genetic association studies of acne. Through a fixed intercept meta-regression framework, we combined evidence genome-wide for association with acne across studies in which case-control status had been ascertained in different settings, allowing for different severity threshold definitions. Across a combined sample of 73,997 cases and 1,103,940 controls of European, South Asian and African American ancestry we identify genetic variation at 165 genomic loci that influence acne risk. There is evidence for both shared and ancestry specific components to the genetic susceptibility to acne and for sex differences in the magnitude of effect of risk alleles at three loci. We observe that common genetic variation explains 13.4% of acne heritability on the liability scale. Consistent with the hypothesis that genetic risk primarily operates at the level of individual pilosebaceous units, a polygenic score derived from this case-control study of acne susceptibility is associated with both self-reported and clinically assessed acne severity in adolescence, further strengthening the link between genetic risk and disease severity. Prioritisation of causal genes at the identified acne risk loci, provides genetic validation of the targets of established and emerging acne therapies, including retinoid treatments. The identified acne risk loci are enriched for genes encoding downstream effectors of RXRA signalling, including SOX9 and components of the WNT and p53 pathways. Illustrating that the control of stem cell lineage plasticity and cellular fate are important mechanisms through which genetic variation influences acne susceptibility within the pilosebaceous unit.
Immune, Developmental, and Synaptic Pathways Define Bipolar Disorder Clinical Heterogeneity.MedRxiv : The Preprint Server For Health Sciences • July 16, 2025
Tracey Van Der Veen, Markos Tesfaye, Jessica Mei Yang, Toni Boltz, Friederike David, Shane Crinion, Maria Koromina, Till F Andlauer, Tim Bigdeli, Brandon Coombes, Tiffany Greenwood, Georgia Panagiotaropoulou, Nadine Parker, Heejong Sung, Nicholas Bass, Jonathan R Coleman, JosĂ© Guzman Parra, Janos Kalman, Caroline Mcgrouther, Brittany Mitchell, Aaditya Rangan, Katie Scott, Alexey Shadrin, Daniel Smith, Annabel Vreeker, Kristina Adorjan, Diego Albani, Silvia Alemany, Ney Alliey Rodriguez, Anastasia Antoniou, Michael Bauer, Eva Beins, Marco Boks, Rosa Bosch, Ben Brumpton, Nathalie Brunkhorst Kanaan, Monika Budde, William Byerley, Judit Cabana DomĂnguez, Murray Cairns, Bernardo Carpiniello, Miquel Casas, Pablo Cervantes, Chris Chatzinakos, Toni-kim Clarke, Isabelle Claus, Cristiana Cruceanu, Alfredo Cuellar Barboza, Piotr Czerski, Konstantinos Dafnas, Anders Dale, Nina Dalkner, J Depaulo, Franziska Degenhardt, Srdjan Djurovic, Valentina Escott Price, Ayman Fanous, Frederike Fellendorf, I Ferrier, Liz Forty, Josef Frank, Oleksandr Frei, Nelson Freimer, Julie Garnham, Ian Gizer, Scott Gordon, Katherine Gordon Smith, Tim Hahn, L Marian, Arvid Harder, Martin Hautzinger, Urs Heilbronner, Dennis Hellgren, Stefan Herms, Ian Hickie, Per Hoffmann, Peter Holmans, StĂ©phane Jamain, Lina Jonsson, James Kennedy, Sarah Kittel Schneider, James Knowles, Elise Koch, Manolis Kogevinas, Thorsten Kranz, Steven Kushner, Catharina Lavebratt, Jacob Lawrence, Markus Leber, Penelope Lind, Susanne Lucae, Martin Lundberg, Donald Macintyre, Wolfgang Maier, Adam Maihofer, Dolores Malaspina, Mirko Manchia, Eirini Maratou, Lina Martinsson, Melvin Mcinnis, James Mckay, Helena Medeiros, Andreas Meyer Lindenberg, Vincent Millischer, Derek Morris, Paraskevi Moutsatsou, Thomas MĂĽhleisen, Claire 'donovan, Catherine Olsen, Sergi Papiol, Antonio Pardiñas, Amy Perry, Andrea Pfennig, Claudia Pisanu, James Potash, Digby Quested, Mark Rapaport, Eline Regeer, John Rice, Margarita Rivera, Eva Schulte, Fanny Senner, Paul Shilling, Lisa Sindermann, Lea Sirignano, Dan Siskind, Claire Slaney, Olav Smeland, Janet Sobell, Maria Artigas, Dan Stein, Frederike Stein, Beata Swiatkowska, Jackson Thorp, Claudio Toma, Leonardo Tondo, Paul Tooney, Marquis Vawter, Helmut Vedder, James T Walters, Stephanie Witt, Allan Young, Peter Zandi, Lea Zillich, Bernhard Baune, Frank Bellivier, Susanne Bengesser, Wade Berrettini, Joanna Biernacka, Douglas Blackwood, Michael Boehnke, Gerome Breen, Vaughan Carr, Stanley Catts, Sven Cichon, Aiden Corvin, Nicholas Craddock, Udo Dannlowski, Dimitris Dikeos, Tõnu Esko, Bruno Etain, Panagiotis Ferentinos, Mark Frye, Janice Fullerton, Micha Gawlik, Elliot Gershon, Fernando Goes, Melissa Green, Joanna Hauser, Frans Henskens, Jens Hjerling Leffler, Ian Jones, Lisa Jones, RenĂ© Kahn, John Kelsoe, Tilo Kircher, George Kirov, Nene Kobayashi, Mikael LandĂ©n, Marion Leboyer, Melanie Lenger, Qingqin Li, Jolanta Lissowska, Carmel Loughland, Jurjen Luykx, Nicholas Martin, Carol Mathews, Fermin Mayoral, Susan Mcelroy, Andrew Mcintosh, Sarah Medland, Ingrid Melle, Philip Mitchell, Gunnar Morken, Richard Myers, Chiara Möser, Bertram MĂĽller Myhsok, Benjamin Neale, Caroline Nievergelt, John Nurnberger, Markus Nöthen, Michael O'donovan, Ketil Oedegaard, Tomas Olsson, Michael Owen, Sara Paciga, Christos Pantelis, Carlos Pato, Michele Pato, George Patrinos, Joanna Pawlak, Roy Perlis, Josep Ramos Quiroga, Andreas Reif, Eva Reininghaus, Marta RibasĂ©s, Marcella Rietschel, Stephan Ripke, Guy Rouleau, Ulrich Schall, Martin Schalling, Peter Schofield, Thomas Schulze, Laura Scott, Rodney Scott, Alessandro Serretti, Jordan Smoller, Alessio Squassina, Eli Stahl, Eystein Stordal, Fabian Streit, Patrick Sullivan, Gustavo Turecki, Arne Vaaler, Eduard Vieta, John Vincent, Irwin Waldman, Cynthia Weickert, Thomas Weickert, David Whiteman, Martin Alda, Roel Ophoff, Kevin O'connell, Niamh Mullins, Andreas Forstner, Maria Grigoroiu Serbanescu, Howard Edenberg, Francis Mcmahon, Ole Andreassen, Arianna Di Florio, Andrew Mcquillin
The clinical heterogeneity of bipolar disorder (BD) is a major obstacle to improving diagnosis, predicting patient outcomes, and developing personalized treatments. A genetic approach is needed to deconstruct the disorder and uncover its fundamental biology. Previous genetic studies focusing on broad diagnostic categories have been limited in their ability to parse this complexity. To test the hypothesis that clinically distinct subphenotypes of BD are associated with different underlying common variant genetic architectures. This multicenter study included a primary genome-wide association study (GWAS) of up to 23,819 bipolar disorder (BD) cases and 163,839 controls. These results were integrated via multi-trait analysis of GWAS (MTAG) with external summary statistics for BD (59,287 cases; 781,022 controls) and schizophrenia (SCZ; 53,386 cases; 77,258 controls). Sample overlap was statistically accounted for. The primary outcomes were the genetic dimensions underlying BD heterogeneity, differentiated by single nucleotide polymorphism (SNP)-heritability (h 2 SNP ), genetic correlations, genomic loci ( P ≤5×10 -8 ), and functional, cell-type, and gene-expression pathway analyses. We identified four genetically-informed dimensions of BD: Severe Illness, Core Mania, Externalizing/Impulsive Comorbidity, and Internalizing/Affective Comorbidity. The analyses yielded up to 181 subphenotype-associated loci, 53 of which are novel. The Severe Illness Dimension was characterized by a unique neuro-immune signature (a protective association with HLA-DMB , P =2.50×10 -273 ) evident only when leveraging SCZ genetic data. The Internalizing/Affective dimension was associated with neurodevelopmental genes (e.g., DCC ). Notably, the rapid-cycling subphenotype showed a unique signature of strong negative selection, a finding not observed in other subphenotypes. The clinical heterogeneity of bipolar disorder appears to be defined by a complex and multi-layered genetic architecture. The presented findings provide an empirical framework that may advance psychiatric nosology beyond its current diagnostic boundaries. These results may also inform future research to identify targets for personalized interventions. The delineation of these genetically-informed dimensions offers specific, biologically-grounded hypotheses for subsequent therapeutic discovery. Establishing such a framework is an essential step toward refining diagnostic criteria and developing more effective, personalized treatments. This work lays the foundation for a transition from a uniform treatment model to the paradigm of precision psychiatry. Question: What are the distinct genetic architectures underlying the clinical heterogeneity of bipolar disorder?Findings: In this genetic study of 23,819 bipolar disorder (BD) cases and 163,839 controls, clinical heterogeneity mapped onto four genetically-informed dimensions. A severe illness dimension was defined by a neuro-immune signature ( HLA-DMB ) shared with schizophrenia. An affective comorbidity dimension was distinguished by neurodevelopmental pathways involving axonal guidance ( DCC ). Notably, the rapid-cycling phenotype showed evidence of purifying selection, suggesting influence by rare, highly penetrant alleles. Meaning: These findings provide a data-driven biological framework for bipolar disorder, guiding future research toward patient stratification and targeted therapeutics.
Global multi-ancestry genetic study elucidates genes and biological pathways associated with thyroid cancer and benign thyroid diseases.MedRxiv : The Preprint Server For Health Sciences • June 04, 2025
Samantha White, Maizy Brasher, Jack Pattee, Wei Zhou, Sinéad Chapman, Yon Jee, Caitlin Bell, Taylor Jamil, Martin Barrio, Jibril Hirbo, Nancy Cox, Peter Straub, Shinichi Namba, Emily Bertucci Richter, Lindsay Guare, Ahmed Edrismohammed, Sam Morris, Ashley Mulford, Haoyu Zhang, Brian Fennessy, Martin Tobin, Jing Chen, Alexander Williams, Catherine John, David Van Heel, Rohini Mathur, Sarah Finer, Marta Moksnes, Ben Brumpton, Bjørn Åsvold, Raitis Peculis, Vita Rovite, Ilze Konrade, Ying Wang, Kristy Crooks, Sameer Chavan, Matthew Fisher, Nicholas Rafaels, Meng Lin, Jonathan Shortt, Alan Sanders, David Whiteman, Stuart Macgregor, Sarah Medland, Unnur Thorsteinsdóttir, Kári Stefánsson, Tugce Karaderi, Kathleen Egan, Therese Bocklage, Hilary Mccrary, Greg Riedlingeer, Bodour Salhia, Craig Shriver, Minh Phan, Janice Farlow, Stephen Edge, Varinder Kaur, Michelle Churchman, Robert Rounbehler, Pamela Brock, Matthew Ringel, Milton Pividori, Rebecca Schweppe, Christopher Raeburn, Robin Walters, Zhengming Chen, Liming Li, Koichi Matsuda, Yukinori Okada, Sebastian Zoellner, Anurag Verma, Michael Preuss, Eimear Kenny, Audrey Hendricks, Lauren Fishbein, Peter Kraft, Mark Daly, Benjamin Neale, Christopher Gignoux, Nikita Pozdeyev
Thyroid diseases are common and highly heritable. Under the Global Biobank Meta-analysis Initiative, we performed a meta-analysis of genome-wide association studies from 19 biobanks for five thyroid diseases: thyroid cancer, benign nodular goiter, Graves' disease, lymphocytic thyroiditis, and primary hypothyroidism. We analyzed genetic association data from ~2.9 million genomes and identified 235 known and 501 novel independent variants significantly linked to thyroid diseases. We discovered genetic correlations between thyroid cancer, benign nodular goiter, and autoimmune thyroid diseases (r 2 =0.21-0.97). Telomere maintenance genes contribute to benign and malignant thyroid nodular disease risk, whereas cell cycle, DNA repair, and DNA damage response genes are predominantly associated with thyroid cancer. We proposed a paradigm explaining genetic predisposition to benign and malignant thyroid nodules. We evaluated thyroid cancer polygenic risk scores (PRS) for clinical applications in thyroid cancer diagnosis. We found PRS associations with thyroid cancer risk features: multifocality, lymph node metastases, and extranodal extension.